Basic Information
VIS ID
TVIS30003091
Fusion event
HIV-SEC1P integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
49145181/48641924 (Hg38)
End
49145181/48641924 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA19A
Target gene
SEC1P
Nearest miRNA
hsa-mir-10395/Upstream/1414903; hsa-let-7e/Downstream/367982;
Nearest TSS
ENST00000633603/Upstream/2465; ENST00000522283/Downstream/4388;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/4050, chr19-CpG: 66/Downstream/19574
Upstream sequence
tttttttttttttttttttttggtagagagggttctccctatgttgcccaggctggtcttaaattcctgggctcaagtcatcatcctgccttagcctctg
Downstream sequence
aaaaatactggaattacacgcatgaagcactgcacctggccaaaggtgacattttaatggggacctgaaggataagcaggggtgacttgcaaaagaacaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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