Basic Information
VIS ID
TVIS30003092
Fusion event
HIV-chr19 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
49380212/48876955 (Hg38)
End
49380212/48876955 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA19A
Nearest miRNA
hsa-mir-10395/Upstream/1649934; hsa-let-7e/Downstream/132951;
Nearest TSS
ENST00000633603/Upstream/2637; ENST00000443560/Downstream/5170;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/4284, chr19-CpG: 29/Downstream/23010
Nearby gene
PPP1R15A(No orient, 893)
Upstream sequence
cacttggcaacgggcgtcttcccagatgctggcgttaccgctagaccaaggagcccttctgctggccctgtccgggcataacagaagcctcgcactcttg
Downstream sequence
tcttgtggtcacttctcactatgtctcctcagctcctatctctgtatggcctggtttttcctaggttatgattatagagcgaggattattataatattgg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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