Basic Information
VIS ID
TVIS30003099
Fusion event
HIV-NOSIP integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
50077708/49574451 (Hg38)
End
50077708/49574451 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
NOSIP
miRNAs that regulate target gene
hsa-mir-193b-3p ; hsa-mir-124-3p ; hsa-mir-218-5p
Nearest miRNA
hsa-mir-10395/Upstream/73583; hsa-let-7e/Downstream/107666;
Nearest TSS
ENST00000633603/Upstream/13760; ENST00000596877/Downstream/4827;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/17533, chr19-CpG: 17/Downstream/6049
Upstream sequence
agaataggaaaactgccattttgcaacctctggtgaaatagctgactcaggcaatgattgttgatggatgGCATTAAAGGAGAGGCTGATGGGGCCTGGA
Downstream sequence
TAGTCACAGGATGCTAATTCTTGCTACTGGAAAATACACAGTTGTAGCTTTACAATGCGGTTTTCGATGGCTGCCACCtgtctcagtctgctccagctgc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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