VISDB Viral Integration Site DataBase

VIS ID

TVIS30003106

Fusion event

HIV-ZNF83 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

q13.41

Reference genome

Start

End

53162303/52659050 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-340-5p ; hsa-mir-155-5p ; hsa-mir-629-3p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-329-5p ; hsa-mir-4262 ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p ; hsa-mir-219a-2-3p ; hsa-mir-219b-3p ; hsa-mir-4452 ; hsa-mir-6844 ; hsa-mir-3925-3p ; hsa-mir-766-3p ; hsa-mir-510-3p ; hsa-mir-488-3p ; hsa-mir-1257 ; hsa-mir-6730-5p ; hsa-mir-5681a ; hsa-mir-4302 ; hsa-mir-4715-3p ; hsa-mir-3064-3p ; hsa-mir-770-5p ; hsa-mir-4712-5p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-6873-3p ; hsa-mir-6845-3p ; hsa-mir-4752 ; hsa-mir-3911 ; hsa-mir-8056 ; hsa-mir-3691-5p ; hsa-mir-376c-5p ; hsa-mir-376b-5p ; hsa-mir-4320 ; hsa-mir-1825 ; hsa-mir-664a-3p ; hsa-mir-4729 ; hsa-mir-29b-2-5p ; hsa-mir-584-5p ; hsa-mir-3193 ; hsa-mir-1539 ; hsa-mir-758-5p ; hsa-mir-218-2-3p ; hsa-mir-8076

Nearest miRNA

hsa-let-7e/Upstream/377157; hsa-mir-10394/Downstream/1007629;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/20490, chr19-CpG: 59/Downstream/30836

Upstream sequence

ataaatgcctggagtgcgagctgctcagggccggctcttggtgtgcaggcgattgggcacccagcaggactggcaaagcagaatatctatgtgtcggtgt

Downstream sequence

acgtttcattcatccgtctgggccagggtccgtgggcagacccccgcaGCTAATGCCCTCTTGTGAGGAGCAATACCTCAGTTGATGTCCTGTGTGAGGA