Basic Information
VIS ID
TVIS30003110
Fusion event
HIV-chr19 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.43
Reference genome
GRCh37/hg19
Start
57812831/57301463 (Hg38)
End
57812831/57301463 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA19A
Nearest miRNA
hsa-let-7e/Upstream/1913221; hsa-mir-10394/Downstream/1033225;
Nearest TSS
ENST00000633603/Upstream/19576; ENST00000593427/Downstream/2842;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/20608, chr19-CpG: 26/Downstream/16108
Nearby gene
ZNF460(No orient, 7395)
Upstream sequence
cctgcattgatgtctgtgcatctggtgaaacaatggcgtcttcccatttttctacagtcactttcatagaggctttcacctgcacttggtccttagtgtg
Downstream sequence
ctagttgagaagggtgtagtaactctgtttccagataagtgaaatggtatagtctttgttcagctttatcaacagtatttaatgttggcagtaactttgt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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