Basic Information
VIS ID
TVIS30003115
Fusion event
HIV-ASAP2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p25.1
Reference genome
GRCh37/hg19
Start
9471401/9331272 (Hg38)
End
9471401/9331272 (Hg38)
Orient
+
Location type
Intronic
Target gene
ASAP2
miRNAs that regulate target gene
hsa-mir-375 ; hsa-mir-218-5p ; hsa-mir-4672 ; hsa-mir-3613-3p ; hsa-mir-6768-5p ; hsa-mir-618 ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p
Nearest miRNA
hsa-mir-7158/Upstream/2680833; hsa-mir-10b/Downstream/861342;
Nearest TSS
ENST00000437798/Upstream/8151; ENST00000471687/Downstream/19187;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/11947, chr2-CpG: 21/Downstream/43322
Upstream sequence
CTGTGCTCCGCCAGGGTGAAGAGGCCACTGTGTAAACCAGATTCCAGGGCTCAGGTTTGGCTGTTGACCCTTGGAACTACGTAGATATGCGTTATTTTGC
Downstream sequence
TTTTTCTTCTCGCTTTAAGTGTTCTTAAAGAATACTTCGTGTTCTTTTATTTTTATTTCATTTAAGGAAGGAATTTTCATCTCTACCTCTTTCCTGGAAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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