Basic Information
VIS ID
TVIS30003117
Fusion event
HIV-LOC105373430 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p25.1
Reference genome
GRCh37/hg19
Start
12002676/11862550 (Hg38)
End
12002676/11862550 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105373430
Nearest miRNA
hsa-mir-4261/Upstream/25564; hsa-mir-10b/Downstream/336580;
Nearest TSS
ENST00000437798/Upstream/13928; ENST00000450916/Downstream/3335;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/77423, chr2-CpG: 204/Downstream/853949
Nearby gene
MIR4262(No orient, 25564)
Upstream sequence
GCCAGGTTCCCTTTCCAGCTGGCTCAATTCCTTTTCTTTTTCTTAGAGGATTTTAAGAAACTGTGTTCATTTGTTCATTTATTCATTCAATGAACTCTTA
Downstream sequence
CTACTTACATCAACAGCATGCACACATGAAGACAATGCTTTAAGTGTTATTGTCAACTCCAAACATATTCCCCGGGTAGTcagagaagggaacactaaat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate