Basic Information
VIS ID
TVIS30003119
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
12837427/12697301 (Hg38)
End
12837427/12697301 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-3681/Upstream/498100; hsa-mir-10b/Downstream/40066;
Nearest TSS
ENST00000437798/Upstream/98314; ENST00000569860/Downstream/18114;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/912174, chr2-CpG: 204/Downstream/19198
Nearby gene
TRIB2(No orient, 19571)
Nearest cancer related gene
TRIB2(OG, No orient, 19571)
Upstream sequence
gtaatgtcaattctttttaTACAAATGTCACTCCCCTCCCGAATTGCCCTTGATCCTCAACTCTTAAAAAGTCCAATATTTGGGTTAAGAAAGTTCTGAG
Downstream sequence
TAAGTATCTGCGATGGCAACTTGTGACAGTGTAGGATTTTGATGTGCTTACTAGGTGCTACTTACACGTCGTTAAGTGCCCTTAAAAATCACTATTCACA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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