Basic Information
VIS ID
TVIS30003121
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
14716095/14575971 (Hg38)
End
14716095/14575971 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-3125/Upstream/1838527; hsa-mir-10b/Downstream/4772458;
Nearest TSS
ENST00000437798/Upstream/175008; ENST00000450715/Downstream/40457;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1857078, chr2-CpG: 248/Downstream/56282
Nearby gene
LRATD1(No orient, 56715)
Upstream sequence
CTACTGCTTCTTTATTCTGGAGGAATAACACAATTCATATATGGAGCAAgagtctgatgagacagaatgctcaaatacccaagttatagaaagcaggttt
Downstream sequence
attacttacaaataggtagcaagggaccacagaaaccgggattcagggcaagcttgcttcaggacaaggctcaggaaagctgcccagggcagatgtagcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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