Basic Information
VIS ID
TVIS30003123
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p24.1
Reference genome
GRCh37/hg19
Start
22537305/22314433 (Hg38)
End
22537305/22314433 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-3125/Upstream/2965928; hsa-mir-10b/Downstream/3014207;
Nearest TSS
ENST00000437798/Upstream/348753; ENST00000419013/Downstream/63161;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1270344, chr2-CpG: 256/Downstream/1070425
Upstream sequence
atttttctttttgttttatttgatgttagcccatcttttcattcacattcaccatcccctaactcctcagatccccccctcaaaaaaaatcttacgttgg
Downstream sequence
aagcttaggtcattaattttcagaattttgttttctaattcgtataacatttagtactatacatttccatccaagtactactgtaactcatttcacaatt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate