Basic Information
VIS ID
TVIS30003124
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p23.3
Reference genome
GRCh37/hg19
Start
24228513/24005643 (Hg38)
End
24228513/24005643 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-3125/Upstream/4657138; hsa-mir-10b/Downstream/1322997;
Nearest TSS
ENST00000437798/Upstream/34279; ENST00000495018/Downstream/4438;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/64635, chr2-CpG: 66/Downstream/4167
Nearby gene
MFSD2B(No orient, 4440)
Upstream sequence
taccaggttgcccattggaaaaggagcaagaacgaatgctgatcagtagtggtagtacacctgtgaatagTTTAAAAAGTGAAAAAAAAAAAAgccaggc
Downstream sequence
gcagtggctcatgcctgtaatcccagcagtttgtgaggccgaggtgggctgatcacaagatcaggaattccagaccagcctagccaacatggtaaaaccc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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