Basic Information
VIS ID
TVIS30003127
Fusion event
HIV-DTNB integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p23.3
Reference genome
GRCh37/hg19
Start
25889853/25666984 (Hg38)
End
25889853/25666984 (Hg38)
Orient
-
Location type
Intronic
Target gene
DTNB
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-let-7e-5p ; hsa-mir-143-3p
Nearest miRNA
hsa-mir-1301/Upstream/338263; hsa-mir-10b/Downstream/2329383;
Nearest TSS
ENST00000437798/Upstream/13804; ENST00000462003/Downstream/5962;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/289958, chr2-CpG: 123/Downstream/6049
Upstream sequence
AAGCTAAAAAATACTGCTGCCAATCTCTGCCTAGAACTACAGTTTATCTAATACTCTAGGCTTAGATAAGTGGGAAGATATAAACAGCCTCAGGACCATA
Downstream sequence
CTCTATGAGAGGATCGAAAATAGCCCAATTAACTCAAAGGGCAGGACCCTTGACCCACAATTATCATATCTGATTCTAGACTGAGGCCCAGTAGGTCAGC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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