Basic Information
VIS ID
TVIS30003129
Fusion event
HIV-KIF3C integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p23.3
Reference genome
GRCh37/hg19
Start
26168285/25945416 (Hg38)
End
26168285/25945416 (Hg38)
Orient
-
Location type
Intronic
Target gene
KIF3C
miRNAs that regulate target gene
hsa-mir-186-3p
Nearest miRNA
hsa-mir-1301/Upstream/616695; hsa-mir-10b/Downstream/2050951;
Nearest TSS
ENST00000437798/Upstream/66900; ENST00000462003/Downstream/6503;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/66632, chr2-CpG: 76/Downstream/36269
Upstream sequence
TCTACTTTATAGTCTGGTAGTTAAAAATCCTGTCCTTTCACAGCTGCAGCCTGGGTTCAATAATTCTTGGTCTGGGTAGTCCCTTTACAAAGGATaaaac
Downstream sequence
taaggccaggttcggtggctcaagcctgtaatcccagctacttaggaggctgaggcatgagaattgcttgaacccaggaggcggagggtgcagtgagcca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate