VISDB Viral Integration Site DataBase

VIS ID

TVIS30003131

Fusion event

HIV-AGBL5 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

p23.3

Reference genome

Start

End

27276244/27053376 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-4684-5p ; hsa-mir-6827-3p ; hsa-mir-340-3p ; hsa-mir-6849-3p ; hsa-mir-4293 ; hsa-mir-6771-3p ; hsa-mir-4325 ; hsa-mir-7703 ; hsa-mir-500a-3p ; hsa-mir-6512-3p ; hsa-mir-6720-5p ; hsa-mir-3135a ; hsa-mir-767-5p ; hsa-mir-766-3p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-367-3p ; hsa-mir-363-3p ; hsa-mir-32-5p ; hsa-mir-25-3p ; hsa-mir-508-5p ; hsa-mir-665 ; hsa-mir-4535 ; hsa-mir-4776-5p ; hsa-mir-711 ; hsa-mir-4722-5p ; hsa-mir-1827 ; hsa-mir-4768-3p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-7160-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-4649-3p ; hsa-mir-6840-3p ; hsa-mir-4459 ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-3622b-5p ; hsa-mir-4764-5p ; hsa-mir-1287-5p ; hsa-mir-6804-3p ; hsa-mir-5690 ; hsa-mir-502-3p ; hsa-mir-501-3p

Nearest miRNA

hsa-mir-1301/Upstream/1724655; hsa-mir-10b/Downstream/942991;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/1291, chr2-CpG: 77/Downstream/17895

Upstream sequence

ACCCATCGTCCCTCCTTTCTCCTTGCCAAATAGCCCTTTCCCAGTTTGGCTGGCTCCGGCTCTCCCACAGACCATATCTCCAACCCTTCCACACGTAATG

Downstream sequence

ACCTCTCTCTTACTCTGGTCCTCAGGTCATGGTTCTACTTCAGCGTCCGGGGAGGAATGCCAGGAAAACTCATCAAGATCAACATTATGAACATGAACAA