Basic Information
VIS ID
TVIS30003134
Fusion event
HIV-LOC101929418 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p23.1
Reference genome
GRCh37/hg19
Start
30170291/29947425 (Hg38)
End
30170291/29947425 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC101929418
Nearest miRNA
hsa-mir-1301/Upstream/1950976; hsa-mir-10b/Downstream/2584728;
Nearest TSS
ENST00000437798/Upstream/25859; ENST00000482474/Downstream/188908;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/25741, chr2-CpG: 170/Downstream/199020
Nearby gene
ALK(No orient, 25814)
Upstream sequence
CCCAACCTGGGCTGGTATACACACCTTGACACTATTAAGGGAGGGTCTTTCAACCTCTAATTGCACCCTGTCTTTACTGTGATGGTGATGATGGGAGGGG
Downstream sequence
ATACTTACCACTTACTTCCAATAGTCACCTATCCTACAGGTGATCCTCCAATGcggggatctgcaaacagagccccgtgggccaaatatgacctactgct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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