Basic Information
VIS ID
TVIS30003135
Fusion event
HIV-BIRC6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
32737971/32512904 (Hg38)
End
32737971/32512904 (Hg38)
Orient
+
Location type
Intronic
Target gene
BIRC6
miRNAs that regulate target gene
hsa-let-7b-5p ; hsa-mir-218-5p ; hsa-mir-615-3p ; hsa-mir-34a-5p ; hsa-let-7a-5p ; hsa-mir-342-3p
Nearest miRNA
hsa-mir-1301/Upstream/4516455; hsa-mir-10b/Downstream/19249;
Nearest TSS
ENST00000437798/Upstream/3225; ENST00000461788/Downstream/2837;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/154707, chr2-CpG: 20/Downstream/115036
Upstream sequence
ATAATCAAAAACAATTAGTGCATTATTCTCATAAATACCCTACTCACCATGCAGAGATGGTATTTATCTATATGAAATGCCAATTGCACTATATAGTTGG
Downstream sequence
TTATATGAATTCGTTTTCTTCGTTTAAGAATTCAGGCCTTGTTAAAATGGGTTAGTGATTCTGCAAGAGTGGCTGCTATGAAGAGAAGTGGCAGGATGAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate