Basic Information
VIS ID
TVIS30003141
Fusion event
HIV-LOC105374506 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
41692852/41465712 (Hg38)
End
41692852/41465712 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105374506
Nearest miRNA
hsa-mir-1301/Upstream/5994226; hsa-mir-10b/Downstream/5911963;
Nearest TSS
ENST00000437798/Upstream/719225; ENST00000418836/Downstream/411362;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1013225, chr2-CpG: 36/Downstream/231740
Nearby gene
LOC388942(No orient, 411843)
Upstream sequence
GATGAGTTTCTGCCAGGTTTCCCAGTCCACATAAGAAGTAGTGGATCTTTTCCAGGCTGCAGTTTTTTTTTCCCTGGCCCAGGCCTAGGACCTAACCATA
Downstream sequence
GTACTTGGAACATAGCGGTGTCCAGTAAATATCTCCTATTACGGTTTTTTAATCCCTGGCTTCCAGAAGACCAGCTTCCTTCTACCCCTTTTTAACTGCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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