Basic Information
VIS ID
TVIS30003156
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p12
Reference genome
GRCh37/hg19
Start
77850803/77623677 (Hg38)
End
77850803/77623677 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1285-2/Upstream/2532763; hsa-mir-10b/Downstream/2025617;
Nearest TSS
ENST00000437798/Upstream/30358; ENST00000438443/Downstream/30991;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1912664, chr2-CpG: 32/Downstream/1369389
Nearby gene
LRRTM4(No orient, 101301)
Upstream sequence
ACCATTGTTTAAAAGACAATGAACTAAAAAGAGTCAAAGGGATACTGACAGTGTGTGCACACACACATGCACACACACCTCtatatgcacacatatacat
Downstream sequence
atacttatatatatacacatatagtatttttactaacacatatgtatatgtatttactatatatatgtgtgaatatatatcaatatattaattacattaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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