Basic Information
VIS ID
TVIS30003157
Fusion event
HIV-CTNNA2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p12
Reference genome
GRCh37/hg19
Start
80011975/79784849 (Hg38)
End
80011975/79784849 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
CTNNA2
Nearest miRNA
hsa-mir-1285-2/Upstream/135490; hsa-mir-10b/Downstream/81646;
Nearest TSS
ENST00000437798/Upstream/87003; ENST00000493024/Downstream/245702;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/271732, chr2-CpG: 101/Downstream/517703
Nearest cancer related gene
CTNNA2(TSG, No orient, 0)
Upstream sequence
agagaatgaaatatatatatatatatataaaaacatggatgaatctcataaatgtaatgttgaaaaaaagcagtgagccacaaatatacaacctatgctt
Downstream sequence
ttatctatataaaggaaaaaaacaggcgaaacttacttatgctattagaagtcaggttgcccgtgaagcttagtgactgggaggcattgtatgggagctt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate