Basic Information
VIS ID
TVIS30003158
Fusion event
HIV-LOC102724542 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p12
Reference genome
GRCh37/hg19
Start
81833355/81606231 (Hg38)
End
81833355/81606231 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
LOC102724542
Nearest miRNA
hsa-mir-1285-2/Upstream/1739648; hsa-mir-10b/Downstream/4177369;
Nearest TSS
ENST00000437798/Upstream/138763; ENST00000448431/Downstream/399469;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/138674, chr2-CpG: 27/Downstream/2684359
Nearby gene
LINC01815(No orient, 139285)
Upstream sequence
GATTTATGGTTTCTGCTCTGGAGTCTGCACTTAACTGAAGCAAGATTGTTCTCAGTGTTTTGATACTCTTTGTTGAGAAACCCTACTAGAGATAAGTAGC
Downstream sequence
TCTAATCAATGTTTTGTGTaaatctccctctcccatgttttctacttcagcaaatgacatctcataatttcaggaactcaaactcaaaatgtctttgtct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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