VISDB Viral Integration Site DataBase

VIS ID

TVIS30003162

Fusion event

HIV-RMND5A integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

p11.2

Reference genome

Start

End

86972992/86745869 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

FRA2S ; FRA2L

Target gene

miRNAs that regulate target gene

hsa-mir-128-3p ; hsa-mir-27a-3p ; hsa-mir-21-5p ; hsa-mir-125b-5p ; hsa-mir-23b-3p ; hsa-let-7e-5p ; hsa-mir-138-5p ; hsa-mir-20a-3p ; hsa-mir-4528 ; hsa-mir-8076 ; hsa-mir-33a-5p ; hsa-mir-33b-5p ; hsa-mir-548d-3p ; hsa-mir-549a ; hsa-mir-548h-3p ; hsa-mir-548z ; hsa-mir-548ac ; hsa-mir-548bb-3p ; hsa-mir-22-3p ; hsa-mir-152-3p ; hsa-mir-570-3p ; hsa-mir-27b-3p ; hsa-mir-342-3p ; hsa-mir-412-3p ; hsa-mir-431-5p ; hsa-mir-5093 ; hsa-mir-6499-3p ; hsa-mir-203a-3p ; hsa-mir-4635 ; hsa-mir-17-3p ; hsa-mir-509-5p ; hsa-mir-509-3-5p ; hsa-mir-4418 ; hsa-mir-548av-3p ; hsa-mir-510-3p ; hsa-mir-4738-3p ; hsa-mir-4301 ; hsa-mir-487b-5p ; hsa-mir-487a-5p ; hsa-mir-1289 ; hsa-mir-3189-3p ; hsa-mir-212-5p ; hsa-mir-3688-3p ; hsa-mir-1245b-3p ; hsa-mir-149-5p ; hsa-mir-3064-5p ; hsa-mir-3194-3p ; hsa-mir-4330 ; hsa-mir-4794 ; hsa-mir-5691 ; hsa-mir-6504-5p ; hsa-mir-664a-5p ; hsa-mir-6805-3p

Nearest miRNA

hsa-mir-1285-2/Upstream/552761; hsa-mir-10b/Downstream/448917;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/24541, chr2-CpG: 171/Downstream/42982

Upstream sequence

tgatgcagggacattattcccattttatatatgaggaaactgagactcaatacccaggtatataatttggaagtagtggatcaaggtttggaaaaagttt

Downstream sequence

ttactcaagaatctgttcttaaacactgtgctgtactAGGAAATCACTGAGGCCATTGCAGAGCTGGTAATGTTGAAGGGGAACAATAATAGTTAAAAAA