Basic Information
VIS ID
TVIS30003163
Fusion event
HIV-ANKRD36C integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q11.1
Reference genome
GRCh37/hg19
Start
96654747/95988999 (Hg38)
End
96654747/95988999 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
ANKRD36C
Nearest miRNA
hsa-mir-1285-2/Upstream/7176545; hsa-mir-10b/Downstream/809279;
Nearest TSS
ENST00000437798/Upstream/43878; ENST00000469320/Downstream/2794;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/198902, chr2-CpG: 101/Downstream/2739
Upstream sequence
gctcacacctgtaatcccagaactttgggaggccgaggcggggggatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccgtc
Downstream sequence
tttactaaaatatacaaaaattagctggccatggtggcacacatctgtaatcccagctactcaggaggctgaggtgggagaatcacttgaacctgagagg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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