Basic Information
VIS ID
TVIS30003167
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
99397356/98780893 (Hg38)
End
99397356/98780893 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA2S ; FRA2A
Nearest miRNA
hsa-mir-1285-2/Upstream/1982540; hsa-mir-10b/Downstream/2528557;
Nearest TSS
ENST00000437798/Upstream/7973; ENST00000496794/Downstream/41411;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/49179, chr2-CpG: 194/Downstream/40941
Nearby gene
LINC02611(-8995) ; RNU4-84P(+1517) ;
Upstream sequence
ttctgagaaactggatttgttagtctctttcttttacctctcagctcctttggcctctgggggtgggtttacctgcttatcacagaaAAAAGAGGTAATG
Downstream sequence
TAAGACAGGaaattttattttttaaaaaaaGTGttttaatttttagtttttttattttttgtgatggagtcttgctctgttgcctaggctggagtattgt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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