Basic Information
VIS ID
TVIS30003168
Fusion event
HIV-LINC01796 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
103508915/102892456 (Hg38)
End
103508915/102892456 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
LINC01796
Nearest miRNA
hsa-mir-1285-2/Upstream/460090; hsa-mir-10b/Downstream/6249034;
Nearest TSS
ENST00000437798/Upstream/94690; ENST00000435291/Downstream/3266;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/155501, chr2-CpG: 44/Downstream/1766674
Nearby gene
TMEM182(No orient, 74777)
Upstream sequence
ACATATAAAACAGAAAGGGTCATTTTGACTTCAGAAGACTCTTTCTTTCTCTCACACACACACAGACATACACGATAATGAAATCTTCCTAGCAAGTTCA
Downstream sequence
GTTAACATTGGACAACGATAATTAATTTGTAGTTGTAGAATAACCTCTCTTATTTACATAGCTTTTAAATATCAGACACCTGATTTAGAAAACATTAAAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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