Basic Information
VIS ID
TVIS30003170
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
104699461/104083003 (Hg38)
End
104699461/104083003 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1285-2/Upstream/1650637; hsa-mir-10b/Downstream/5058487;
Nearest TSS
ENST00000437798/Upstream/29501; ENST00000416008/Downstream/64226;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1346048, chr2-CpG: 44/Downstream/576127
Nearby gene
LOC100287010(No orient, 295847)
Upstream sequence
tgttgaagttctttgggttttgacaaatttgtgacatgtatctactattttagtatcatttaaaatagtttcattgccaggaaaatcctctctactccac
Downstream sequence
ccatttagtccccctgccattaccccaaacctgagaaaactaccgagtttttttactctctctgattttttttctttttcaaaatgtcatacacttggaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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