Basic Information
VIS ID
TVIS30003178
Fusion event
HIV-PTPN4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q14.2
Reference genome
End
120665457/119907881 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-1285-2/Upstream/6186513; hsa-mir-10b/Downstream/7515656;
Upstream sequence
aacatagaaataaatccacgtatttacagccaactgaattttgacaaaggcacctagaacatagagtagggaacagacacccttttccataaatggtact
Downstream sequence
gagaaaactgggtatctattgcagaagaatggaaccagacccttatctcagtatataaaaaatcagctccaaatggattagagagttacacgtaagacct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate