VISDB Viral Integration Site DataBase

VIS ID

TVIS30003181

Fusion event

HIV-DARS integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

q21.3

Reference genome

Start

End

136684216/135926646 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

FRA2S ; FRA2F

Target gene

miRNAs that regulate target gene

hsa-mir-651-5p ; hsa-mir-7977 ; hsa-mir-4266 ; hsa-mir-342-3p ; hsa-mir-383-3p ; hsa-mir-1228-3p ; hsa-mir-4779 ; hsa-mir-4695-5p ; hsa-mir-1305 ; hsa-mir-607 ; hsa-mir-3671 ; hsa-mir-627-3p ; hsa-mir-3691-3p ; hsa-mir-5584-5p ; hsa-mir-6873-5p ; hsa-mir-1264 ; hsa-mir-1972 ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-5089-5p ; hsa-mir-6728-5p ; hsa-mir-769-3p ; hsa-mir-450b-3p ; hsa-mir-4726-5p ; hsa-mir-4640-5p ; hsa-mir-5187-5p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-4755-3p ; hsa-mir-4673 ; hsa-mir-4645-5p ; hsa-mir-5693 ; hsa-mir-6715b-5p ; hsa-mir-4269 ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-6895-5p ; hsa-mir-5582-5p ; hsa-mir-4692 ; hsa-mir-4514 ; hsa-mir-1182 ; hsa-mir-1207-5p ; hsa-mir-129-5p ; hsa-mir-1304-5p ; hsa-mir-1827 ; hsa-mir-215-3p ; hsa-mir-4763-3p ; hsa-mir-6765-5p ; hsa-mir-6773-3p ; hsa-mir-6808-5p ; hsa-mir-6812-3p ; hsa-mir-6893-5p ; hsa-mir-8055 ; hsa-mir-940

Nearest miRNA

hsa-mir-128-1/Upstream/261168; hsa-mir-10b/Downstream/4659980;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/49987, chr2-CpG: 70/Downstream/58471

Upstream sequence

GGTTTAATTTGAAAACCACCAATCACAGGGGTAGATGGGAAAAGAATTAAACAAAAAGGAATTACTAAATATAAGATGTTCTTTAAAAGTAAATAACAAG

Downstream sequence

AAAGAAAAACAAATATTTCAAAATACATCTTCAACTATTTTGATTATGTATCTTACTAGCAAGAATACCCATTACTGCAAACAATCACATTGTGCGAGCG