Basic Information
VIS ID
TVIS30003188
Fusion event
HIV-LOC100505498 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
145950560/145192993 (Hg38)
End
145950560/145192993 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA2S ; FRA2K
Target gene
LOC100505498
Nearest miRNA
hsa-mir-128-1/Upstream/4606308; hsa-mir-10b/Downstream/4137285;
Nearest TSS
ENST00000437798/Upstream/10670; ENST00000414967/Downstream/138854;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/668505, chr2-CpG: 49/Downstream/1394240
Nearby gene
TEX41(No orient, 116269)
Upstream sequence
AATCCTGTTGGCCATTTTGTATTGGTATAAAGTTATGGGCATCTTTTGGATATTTTGATGCATCTAAACCATGTACAGGTATAATCCAATTGTAGACTTT
Downstream sequence
GATGTTATATTTTTGAAATGAGATAGATATAGCTCTATGTACCAACCAAGGGATATCTCACCTAAAACACTGTGATATGTTGTCtacctgatacatatta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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