VISDB Viral Integration Site DataBase

VIS ID

TVIS30003190

Fusion event

HIV-RIF1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

q23.3

Reference genome

Start

End

152325132/151468618 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-103a-3p ; hsa-mir-16-5p ; hsa-mir-421 ; hsa-mir-186-5p ; hsa-mir-183-5p ; hsa-mir-93-5p ; hsa-mir-24-3p ; hsa-mir-4524a-5p ; hsa-mir-4524b-5p ; hsa-mir-5580-3p ; hsa-mir-6507-5p ; hsa-mir-5583-3p ; hsa-mir-223-3p ; hsa-mir-4697-3p ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-494-3p ; hsa-mir-935 ; hsa-mir-4692 ; hsa-mir-6715b-5p ; hsa-mir-4514 ; hsa-mir-4269 ; hsa-mir-4742-5p ; hsa-mir-6871-5p ; hsa-mir-7-2-3p ; hsa-mir-7-1-3p ; hsa-mir-646 ; hsa-mir-503-5p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-129-5p ; hsa-mir-450a-5p ; hsa-mir-4737 ; hsa-mir-4524a-3p ; hsa-mir-6819-5p ; hsa-mir-6812-5p ; hsa-mir-6737-5p ; hsa-mir-7977 ; hsa-mir-6742-5p ; hsa-mir-92a-2-5p ; hsa-mir-6747-5p ; hsa-mir-608 ; hsa-mir-4651 ; hsa-mir-4664-5p ; hsa-mir-342-5p ; hsa-mir-4284 ; hsa-mir-1273h-5p ; hsa-mir-149-3p ; hsa-mir-30a-5p ; hsa-mir-30b-3p ; hsa-mir-30b-5p ; hsa-mir-30c-1-3p ; hsa-mir-30c-2-3p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30e-5p ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-3929 ; hsa-mir-4419b ; hsa-mir-4478 ; hsa-mir-4728-5p ; hsa-mir-4790-3p ; hsa-mir-485-5p ; hsa-mir-490-3p ; hsa-mir-665 ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6785-5p ; hsa-mir-6788-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6884-5p ; hsa-mir-7106-5p ; hsa-mir-7851-3p ; hsa-mir-887-5p ; hsa-mir-890

Nearest miRNA

hsa-mir-128-1/Upstream/100207; hsa-mir-10b/Downstream/7718217;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/57846, chr2-CpG: 64/Downstream/359343

Upstream sequence

AGCCCTAAATTTAAGAGCTCAAAGAAGTGTTTAGTAAGAAGTGCTTTAGTTTTCATGTCACTTTATATTTTCATGTTCAGTCAGTTGACCTCTGTGTAAC

Downstream sequence

AGCTTCTGAAATTTATTCTAAGATTTCAGAAATGGCCAAAGAATCCATACCATGCCCAACAGAAAGTGTTTACCCACCATTGGTGAACTGTGTGGCACCA