Basic Information
VIS ID
TVIS30003192
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
154513934/153657421 (Hg38)
End
154513934/153657421 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-128-1/Upstream/2289010; hsa-mir-10b/Downstream/5529414;
Nearest TSS
ENST00000437798/Upstream/178613; ENST00000434213/Downstream/214492;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/178477, chr2-CpG: 49/Downstream/213972
Nearby gene
RPRM(No orient, 178612)
Nearest cancer related gene
RPRM(TSG, No orient, 178612)
Upstream sequence
TGTCCAGAATGAGCGGAAGAGGGAAGAGATAGAAAACAGTAGGGAACTATTGCAATAGATGGTAGAAATAATaacctttgctgtgtgacaggcatggtac
Downstream sequence
ttagcatttatgtgccttacccacatttaatctacaataatcttatcaattagatactgatttcacccccattttacagttgcagaatctgaaacaaaga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate