Basic Information
VIS ID
TVIS30003193
Fusion event
HIV-CYTIP integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
158291188/157434676 (Hg38)
End
158291188/157434676 (Hg38)
Orient
-
Location type
Intronic
Target gene
CYTIP
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-26b-5p ; hsa-mir-7641 ; hsa-mir-138-2-3p ; hsa-mir-26a-2-3p ; hsa-mir-26a-1-3p ; hsa-mir-6731-3p ; hsa-mir-3691-3p ; hsa-mir-4789-3p ; hsa-mir-7153-5p ; hsa-mir-146b-5p ; hsa-mir-146a-5p ; hsa-mir-3925-5p ; hsa-mir-4668-3p ; hsa-mir-640 ; hsa-mir-378a-5p ; hsa-mir-6778-3p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-3653-5p ; hsa-mir-150-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-1224-3p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-6131 ; hsa-mir-3663-5p
Nearest miRNA
hsa-mir-128-1/Upstream/6066265; hsa-mir-10b/Downstream/1752159;
Nearest TSS
ENST00000437798/Upstream/106963; ENST00000604340/Downstream/4738;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/998179, chr2-CpG: 31/Downstream/162611
Upstream sequence
tgcgtctgtgtgtgtgcgtagagagagagagagagagagaggaagagagagGAAAAAACAGTCTGGAGAGCTATGTTCCTAAATATTTTGGGAGAGACAA
Downstream sequence
AAAATAATTCAATCTCTTTACCTTTGAGACCAGGAAAAGTCACTTAAAGAACTTGATCTGGTCAAAGCAAGCTGAAAAACACAAAAGACATATAGTTATC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate