Basic Information
VIS ID
TVIS30003194
Fusion event
HIV-RBMS1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
161209579/160353068 (Hg38)
End
161209579/160353068 (Hg38)
Orient
-
Location type
Intronic
Target gene
RBMS1
miRNAs that regulate target gene
hsa-mir-30a-5p ; hsa-mir-124-3p ; hsa-mir-16-5p ; hsa-mir-1249-3p ; hsa-mir-4662a-5p ; hsa-mir-325 ; hsa-mir-3976 ; hsa-mir-6856-5p ; hsa-mir-6758-5p
Nearest miRNA
hsa-mir-128-1/Upstream/1166167; hsa-mir-10b/Downstream/54742;
Nearest TSS
ENST00000437798/Upstream/34865; ENST00000477952/Downstream/14458;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/82661, chr2-CpG: 104/Downstream/54211
Upstream sequence
TAAGATTAATTCAAGGGGATATCAAGACAAAATGAGCTTGTTAAAAATTAAAACCTTTTGCAGCTGCATAAGGATTTTCCAAATGTCATACAACCAAAAC
Downstream sequence
AAAATACAGAAATAAATTAGGTATGTTACTGATACTGTTCTGCAACTGTTATCCACATTTTTGAGTTTATCAAAACTGTCTCACTGTTCTCCCTGATAAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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