Basic Information
VIS ID
TVIS30003196
Fusion event
HIV-LOC105373718 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
161489681/160633170 (Hg38)
End
161489681/160633170 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105373718
Nearest miRNA
hsa-mir-128-1/Upstream/225288; hsa-mir-10b/Downstream/7949773;
Nearest TSS
ENST00000437798/Upstream/139376; ENST00000477952/Downstream/503738;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/139310, chr2-CpG: 39/Downstream/527202
Nearby gene
RBMS1(No orient, 139363)
Upstream sequence
CAGAGACTGGAGATGCTTACCCACTAATGATACCATCTGATGGCTGTACCCTCAGCCATTCTCACTGCTAGTGCTATGGGTGTGAACACTTGGAGTTCTC
Downstream sequence
TAGACAGCCCATCTGCAGCATTTTGCTATGCCCTCCATCTGAAGTTCTTTCCCCTCATTGCTGGGGCTTACTCATAATTCCAGAACATGGTTGAACATTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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