Basic Information
VIS ID
TVIS30003197
Fusion event
HIV-SLC4A10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
162832155/161975645 (Hg38)
End
162832155/161975645 (Hg38)
Orient
-
Location type
Intronic
Target gene
SLC4A10
miRNAs that regulate target gene
hsa-mir-30a-5p
Nearest miRNA
hsa-mir-128-1/Upstream/1567763; hsa-mir-10b/Downstream/6607298;
Nearest TSS
ENST00000437798/Upstream/351184; ENST00000418335/Downstream/38817;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/467756, chr2-CpG: 63/Downstream/98078
Upstream sequence
AATCTGGTGCTTTGAATTACCAGGAAACTATCTTTCTAGGAAGACCAAAACAGCTGGAGGGTTTAGAGGAACTGAAGAACACATTTCCAGATTGGGCAAG
Downstream sequence
AGAGGGAGACCCAAGGTTTTGTTCCTCTTAAAAGTTGCATTTGTTCCTCTCCTGTGACCTATCACCAAtcagggtcatatgaaaaggcggcatttgaaca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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