Basic Information
VIS ID
TVIS30003203
Fusion event
HIV-WIPF1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
175438399/174573671 (Hg38)
End
175438399/174573671 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2G
Target gene
WIPF1
miRNAs that regulate target gene
hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-124-3p ; hsa-mir-200c-3p ; hsa-mir-1288-3p ; hsa-mir-5002-3p ; hsa-mir-3917 ; hsa-mir-99b-3p ; hsa-mir-99a-3p
Nearest miRNA
hsa-mir-128-1/Upstream/5990653; hsa-mir-10b/Downstream/593962;
Nearest TSS
ENST00000437798/Upstream/3025; ENST00000454203/Downstream/1556;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/86245, chr2-CpG: 122/Downstream/108463
Upstream sequence
acatgtgagctgaggcctgacaagaaggagtcagccacggaaagatgaggaagaccagcactttgggcagggttggccagcaggtgcagaggccctgagg
Downstream sequence
tgggaaagagcttcaagttcaaaaacgggcccatgtgcccggggcacagtgagaatgggagagatccatgggaagtggagcctgagtggccagcaggggt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate