Basic Information
VIS ID
TVIS30003210
Fusion event
HIV-GLS integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
191811328/190946602 (Hg38)
End
191811328/190946602 (Hg38)
Orient
+
Location type
Intronic
Target gene
GLS
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-7-5p ; hsa-mir-23a-3p
Nearest miRNA
hsa-mir-10b/Upstream/1813491; hsa-mir-1244-1/Downstream/15836632;
Nearest TSS
ENST00000437798/Upstream/15039; ENST00000431351/Downstream/28333;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/64729, chr2-CpG: 70/Downstream/67280
Upstream sequence
TGCTTTTTTTTTTCATTATAGCAGTTCCAAACAGGCTGAATTCATGTTTATATGAAGACAGAAACTAAAGATGAAAAACAGAGGAAATTTTGGTTTGGCA
Downstream sequence
GTTGGTAATGGAGTTAGAAATTAAATAGTTGAAGTAAAGTGTAAAACCAGTGAACCAATTTttcctccgtctctccctccctccatcttctccctttctt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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