Basic Information
VIS ID
TVIS30003227
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q34
Reference genome
GRCh37/hg19
Start
209124640/208259916 (Hg38)
End
209124640/208259916 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA2I
Nearest miRNA
hsa-mir-10b/Upstream/505035; hsa-mir-1244-1/Downstream/4166347;
Nearest TSS
ENST00000437798/Upstream/4118; ENST00000422495/Downstream/6158;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/4331, chr2-CpG: 39/Downstream/6108
Nearby gene
IDH1-AS1(No orient, 3722)
Upstream sequence
acagacaagaaagttttcaaaaaagagggagtactacagagagattaaaagaaaaagacagggtctgaaaataattttggcaaaaggaaaacctcttgaa
Downstream sequence
tgcacttttagtaaaaaggctctatgaggatgaagaagatagaagtggaatggttctacgaggatcagaagatagaagccatactacaggggactgaagc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate