Basic Information
VIS ID
TVIS30003228
Fusion event
HIV-ARPC2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q35
Reference genome
GRCh37/hg19
Start
219089894/218225171 (Hg38)
End
219089894/218225171 (Hg38)
Orient
-
Location type
Intronic
Target gene
ARPC2
miRNAs that regulate target gene
hsa-mir-149-5p ; hsa-mir-93-5p ; hsa-mir-92a-3p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-5006-5p ; hsa-mir-3972 ; hsa-mir-1202 ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-7162-5p ; hsa-mir-516b-3p ; hsa-mir-516a-3p ; hsa-mir-3194-5p ; hsa-mir-6878-3p ; hsa-mir-640 ; hsa-mir-6744-3p ; hsa-mir-4757-5p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-378a-5p ; hsa-mir-3653-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-6131 ; hsa-mir-4755-3p ; hsa-mir-3663-5p ; hsa-mir-411-5p ; hsa-mir-4775 ; hsa-mir-4735-5p ; hsa-mir-6832-5p ; hsa-mir-6872-3p ; hsa-mir-590-3p
Nearest miRNA
hsa-mir-10b/Upstream/324543; hsa-mir-1244-1/Downstream/54954;
Nearest TSS
ENST00000437798/Upstream/7716; ENST00000471355/Downstream/748;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/7597, chr2-CpG: 58/Downstream/44893
Upstream sequence
TGCTTCCTACTTTGGACTTCAGGTCTGTTCTTGTGTTATATGTAGTAGTTCCATGAGGTAAATAGGTTCATTTTTATTCCCCCATTTTATTGATGATAGG
Downstream sequence
GGAGAATGCAAAGGTGTAAGGGTATTTGTCCCAAAACATGAGCGTGATGAGAAAGCTAAAGTTGTAAAGCAGATGTCCTGACTATTCTTAGTGATTTCAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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