VISDB Viral Integration Site DataBase

VIS ID

TVIS30003229

Fusion event

HIV-CUL3 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

q36.2

Reference genome

Start

End

225382544/224517827 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-192-5p ; hsa-let-7b-5p ; hsa-mir-18a-3p ; hsa-mir-10a-5p ; hsa-mir-99a-5p ; hsa-mir-218-5p ; hsa-mir-203a-3p ; hsa-mir-4477a ; hsa-mir-4635 ; hsa-mir-1266-3p ; hsa-mir-4668-3p ; hsa-mir-3613-5p ; hsa-mir-591 ; hsa-mir-6807-5p ; hsa-mir-4764-5p ; hsa-mir-3177-5p ; hsa-mir-1233-3p ; hsa-mir-1225-3p ; hsa-mir-511-3p ; hsa-mir-1265 ; hsa-mir-4536-5p ; hsa-mir-4451 ; hsa-mir-379-5p ; hsa-mir-3529-5p ; hsa-mir-4650-3p ; hsa-mir-5197-3p ; hsa-mir-3120-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-520e ; hsa-mir-302d-3p ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-520c-3p ; hsa-mir-520d-3p ; hsa-mir-520b ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302c-3p ; hsa-mir-520a-3p ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-130a-3p ; hsa-mir-130b-3p ; hsa-mir-3666 ; hsa-mir-301a-3p ; hsa-mir-301b-3p ; hsa-mir-670-5p ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-6734-3p ; hsa-mir-4705 ; hsa-mir-339-5p ; hsa-mir-646 ; hsa-mir-6838-5p ; hsa-mir-503-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p

Nearest miRNA

hsa-mir-10b/Upstream/4611262; hsa-mir-1244-1/Downstream/492634;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/75044, chr2-CpG: 135/Downstream/66712

Upstream sequence

gctcagtttcattaaggtgaagcatgaactagaggcatttgtgaagtaatctgaatgtaaaatccttctagatttttttttactattttcactctaatgt

Downstream sequence

cttaaattacctacacttaattcaaaccagtatgtagccatttgcttttatgaagtctttccaaagcatccaatctagcttgccaaataaaaaattttat