Basic Information
VIS ID
TVIS30003233
Fusion event
HIV-DNER integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q36.3
Reference genome
GRCh37/hg19
Start
230453585/229588869 (Hg38)
End
230453585/229588869 (Hg38)
Orient
-
Location type
Intronic
Target gene
DNER
Nearest miRNA
hsa-mir-10b/Upstream/2116682; hsa-mir-1244-1/Downstream/1773839;
Nearest TSS
ENST00000437798/Upstream/1692; ENST00000465090/Downstream/125689;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/317434, chr2-CpG: 180/Downstream/124477
Upstream sequence
CTCCCTGCTCATTTTCCATTCATTTAACAAGCAGTCATTGACCCCTGCACTATGCTTAACCTGATGCTAACCAGGAGGCCAACTTTAAGGACTAACTTAC
Downstream sequence
AAACAGCAGGTAAAAGCCTAATGACTAGGCAAGCCAGCCTTCGACTTGCAAAGTGCATGCAGTATCAGGTCTGATGACTCTTCTGTGTGCTGATGGGTCC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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