VISDB Viral Integration Site DataBase

VIS ID

TVIS30003237

Fusion event

HIV-CAB39 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

q37.1

Reference genome

Start

End

231601078/230736363 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-451a ; hsa-mir-195-5p ; hsa-mir-375 ; hsa-mir-155-5p ; hsa-mir-877-5p ; hsa-mir-4310 ; hsa-mir-7157-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-27a-3p ; hsa-mir-200b-3p ; hsa-mir-27b-3p ; hsa-mir-200c-3p ; hsa-mir-340-5p ; hsa-mir-429 ; hsa-mir-935 ; hsa-mir-103a-3p ; hsa-mir-107 ; hsa-mir-4477b ; hsa-mir-4700-3p ; hsa-mir-192-3p ; hsa-mir-580-3p ; hsa-mir-526b-5p ; hsa-mir-539-5p ; hsa-mir-5680 ; hsa-mir-6516-5p ; hsa-mir-5047 ; hsa-mir-1301-3p ; hsa-mir-7156-3p ; hsa-mir-651-3p ; hsa-mir-1269a ; hsa-mir-1269b ; hsa-mir-1288-3p ; hsa-mir-3690 ; hsa-mir-378a-3p ; hsa-mir-378b ; hsa-mir-378c ; hsa-mir-378d ; hsa-mir-378e ; hsa-mir-378f ; hsa-mir-378h ; hsa-mir-378i ; hsa-mir-422a ; hsa-mir-4515 ; hsa-mir-4740-5p ; hsa-mir-490-3p ; hsa-mir-515-5p ; hsa-mir-519d-5p ; hsa-mir-519e-5p ; hsa-mir-5695 ; hsa-mir-619-3p

Nearest miRNA

hsa-mir-10b/Upstream/3264176; hsa-mir-1244-1/Downstream/626345;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/22574, chr2-CpG: 82/Downstream/91619

Upstream sequence

GCATGGTGGTAAGGATAAAAGCTACACCCTCGTGCTAAAATTAGATTTTTTCATGTCCTTTGCCTGTCATTTTAGGGAAATGGAGAAAATTAGGGATATG

Downstream sequence

TTTCCTTCTCTCTTTTTTTCTTCTCCCCTTCTGTCTCATCTTCCACGTCACCCCAGAGAGTTAGATAAAAAGCAATGGAAAAAGTGGAGAGATGAAATTA