Basic Information
VIS ID
TVIS30003239
Fusion event
HIV-DIS3L2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q37.1
Reference genome
GRCh37/hg19
Start
233032561/232167851 (Hg38)
End
233032561/232167851 (Hg38)
Orient
+
Location type
Intronic
Target gene
DIS3L2
miRNAs that regulate target gene
hsa-let-7a-5p ; hsa-mir-218-5p
Nearest miRNA
hsa-mir-10b/Upstream/275553; hsa-mir-149/Downstream/4802;
Nearest TSS
ENST00000437798/Upstream/4247; ENST00000498319/Downstream/81489;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/205725, chr2-CpG: 174/Downstream/183119
Upstream sequence
actagttaaaaaattcagccaggcacattggctcacacctgtaatcccagcactttgggaggccaaggtggacagatcacctgaggtcaggagttcgaga
Downstream sequence
ccagcctggccaacatggtgaaaccctgtctcactaaaaatacaaaaattagccgggtgtggtggcagccacctgtaatcccagctgctcgggaggctga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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