Basic Information
VIS ID
TVIS30003241
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q37.1
Reference genome
GRCh37/hg19
Start
235372431/234463787 (Hg38)
End
235372431/234463787 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10b/Upstream/1913214; hsa-mir-149/Downstream/3047144;
Nearest TSS
ENST00000437798/Upstream/9192; ENST00000629370/Downstream/32813;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/367275, chr2-CpG: 184/Downstream/32071
Nearby gene
ARL4C(No orient, 29255)
Upstream sequence
TCTGACAATGTCTGACTTCCCCTTGCTCCTGGAAGGAGCTGAGGGAGGGACATCAATTCATTATGACACTGGCTTTTCTCAGCCTCTTGGAACCACGGGC
Downstream sequence
CTACTTATGCCACCTCGGTGTTTCCCTGAGAAGATATGCTTGGGCTCAACCTGTCTGCACTCATTTCTAACTCCCTTAGGCTTCCTTGTGTTGGGTAAGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate