Basic Information
VIS ID
TVIS30003242
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q37.1
Reference genome
GRCh37/hg19
Start
235390798/234482154 (Hg38)
End
235390798/234482154 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10b/Upstream/1931581; hsa-mir-149/Downstream/3028777;
Nearest TSS
ENST00000437798/Upstream/27559; ENST00000629370/Downstream/14446;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/385642, chr2-CpG: 184/Downstream/13704
Nearby gene
ARL4C(No orient, 10888)
Upstream sequence
GAGACATTTTCACCTGGCAAAGCATATAAGAGACAACCTAATGGCTGTCTTATACACTGGGTTTCTATGGCCACATCTATAAAAGTTTCCCTTGAGATGA
Downstream sequence
ACAGTATCTTATTGAATTGAACAGGGAGAAATTGATGATGAGGATTAACTTGATTTGCTCACAAAATGATGTTATAgaccgggcaaagtgcctcacgcct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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