Basic Information
VIS ID
TVIS30003245
Fusion event
HIV-PASK integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q37.3
Reference genome
GRCh37/hg19
Start
242061599/241122184 (Hg38)
End
242061599/241122184 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2J
Target gene
PASK
miRNAs that regulate target gene
hsa-mir-215-5p ; hsa-mir-192-5p
Nearest miRNA
hsa-mir-10b/Upstream/666095; hsa-mir-3133/Downstream/355721;
Nearest TSS
ENST00000437798/Upstream/9398; ENST00000498170/Downstream/5575;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/19573, chr2-CpG: 198/Downstream/26816
Upstream sequence
atgaaaatatgtgatacacagataaagctggggttggagaaaaattaaaacattaaatgattatattagaaaaaagcatagctcaaataaatgatctaag
Downstream sequence
ataccaccttaggaaaatagaagaagaaaataaaattaaatccaaagtaagaaaaaataatgaaaaaaattttttataataagagaaaagtcacaagatt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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