VISDB Viral Integration Site DataBase

VIS ID

TVIS30003249

Fusion event

HIV-FKBP1A integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr20

Cytoband

p13

Reference genome

Start

End

1350689/1370045 (Hg38)

Orient

-

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-375 ; hsa-mir-103a-3p ; hsa-mir-505-5p ; hsa-mir-320a ; hsa-mir-218-5p ; hsa-mir-92a-3p ; hsa-mir-181a-5p ; hsa-mir-181b-5p ; hsa-mir-181c-5p ; hsa-mir-181d-5p ; hsa-mir-543 ; hsa-mir-4262 ; hsa-mir-5011-5p ; hsa-mir-513a-3p ; hsa-mir-513c-3p ; hsa-mir-3606-3p ; hsa-mir-106a-3p ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-873-3p ; hsa-mir-5582-3p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-137 ; hsa-mir-367-3p ; hsa-mir-25-3p ; hsa-mir-32-5p ; hsa-mir-363-3p ; hsa-mir-92b-3p ; hsa-mir-6835-3p ; hsa-mir-6780b-5p ; hsa-mir-4725-3p ; hsa-mir-6077 ; hsa-mir-4271 ; hsa-mir-4261 ; hsa-mir-4784 ; hsa-mir-3150b-3p ; hsa-mir-5681a ; hsa-mir-151b ; hsa-mir-151a-5p ; hsa-mir-6783-5p ; hsa-mir-4496 ; hsa-mir-6859-5p ; hsa-mir-3916 ; hsa-mir-3125 ; hsa-mir-374b-5p ; hsa-mir-374a-5p ; hsa-mir-889-3p ; hsa-mir-410-3p ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-369-3p ; hsa-mir-451b ; hsa-mir-33a-3p ; hsa-mir-577 ; hsa-mir-1277-5p ; hsa-mir-4282 ; hsa-mir-548c-3p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-195-5p ; hsa-mir-6838-5p ; hsa-mir-424-5p ; hsa-mir-15b-5p ; hsa-mir-497-5p ; hsa-mir-433-3p ; hsa-mir-561-5p ; hsa-mir-1250-3p ; hsa-mir-6830-5p ; hsa-mir-3925-5p ; hsa-mir-541-5p

Nearest miRNA

hsa-mir-1-1/Downstream/22855;

Nearest TSS

Nearest CpG islands

None/Target, chr20-CpG: 39/Upstream/44135, chr20-CpG: 103/Downstream/96246

Upstream sequence

AAAGCTGAGTGACAGAACACATTCAGTCAGGGCAGATGTCTATACAAAGTGGAGTGGAACATCAGGAAAAGCTCCATATGGATTCATGTGCACATGTCTG

Downstream sequence

GAGGCACCAGATCCCTCCATGGCAGATCTGTTGGGGACAGAAAATCTGTGAGTTTCCAGCAACTCAGTGTTCTTTGTGTGCAGTGGCGACAGCCACGATG