Basic Information
VIS ID
TVIS30003250
Fusion event
HIV-SIRPG integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
p13
Reference genome
GRCh37/hg19
Start
1636323/1655677 (Hg38)
End
1636323/1655677 (Hg38)
Orient
-
Location type
Intronic
Target gene
SIRPG
miRNAs that regulate target gene
hsa-mir-4736 ; hsa-mir-7150 ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-6722-3p ; hsa-mir-1909-3p
Nearest miRNA
hsa-mir-6869/Upstream/262716; hsa-mir-1-1/Downstream/997100;
Nearest TSS
ENST00000382410/Upstream/4300; ENST00000400068/Downstream/2037;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/188593, chr20-CpG: 30/Downstream/80007
Upstream sequence
gagaaataagttcaagatatctattgtacaatgtggtgtttatacttaataatatgaattgtattcttgaaaactgctgagagagcagagtttacgagtt
Downstream sequence
ctcacaataaaaaatgataaatatgtaaggtaatgcatatgtttattagttcaaattagtcattccacaatgtatgcatatttcttaatatgttgtacat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate