Basic Information
VIS ID
TVIS30003253
Fusion event
HIV-chr20 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
p13
Reference genome
GRCh37/hg19
Start
3186615/3205969 (Hg38)
End
3186615/3205969 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1292/Upstream/553127; hsa-mir-1-1/Downstream/711525;
Nearest TSS
ENST00000382410/Upstream/1284; ENST00000460676/Downstream/2899;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/1230, chr20-CpG: 44/Downstream/3396
Nearby gene
DDRGK1(No orient, 1320)
Upstream sequence
cgtgatgaaatcctgtctctactaaaaatacaaacaatgagtggggcgtggtggcacatgcctgtaatcccagctactcgggaggctgaggcaggagaat
Downstream sequence
cacttgaacccagggggcggacgttgcagtgagccaagattgcaccactgcacaccagcctgagcgacagagcaagactctgtctcaaaaaaaaaaaaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate