Basic Information
VIS ID
TVIS30003261
Fusion event
HIV-chr20 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
p11.22
Reference genome
GRCh37/hg19
Start
22154215/22173577 (Hg38)
End
22154215/22173577 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-103a-2/Upstream/3702886; hsa-mir-1-1/Downstream/4034609;
Nearest TSS
ENST00000382410/Upstream/119487; ENST00000439450/Downstream/46977;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/458871, chr20-CpG: 69/Downstream/394752
Nearby gene
LINC01432(No orient, 98923)
Upstream sequence
cagtgcagaatttttttagtttaattaggtcccatctatttatttttgtttttgttttattcgcttttagattcttggttatgaattctttgcctaagcc
Downstream sequence
aatgtctagaagagtttttctgatgttatcgtctagaatttttagggtttcaggtcttagatttaagtctttgatccatcttgagtttatttttgtgtaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate