Basic Information
VIS ID
TVIS30003274
Fusion event
HIV-chr20 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q11.22
Reference genome
GRCh37/hg19
Start
34344974/35757052 (Hg38)
End
34344974/35757052 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-103a-2/Upstream/302955; hsa-mir-1-1/Downstream/2759511;
Nearest TSS
ENST00000382410/Upstream/14740; ENST00000617560/Downstream/14922;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/14411, chr20-CpG: 48/Downstream/14699
Nearby gene
RBM39(No orient, 14716)
Upstream sequence
cacacgcctggccTAAtttttatttttatagacatggggcctcactttgttgcccagcctgatcttgaactcgtgggcacaagcaatcctcccaccttgg
Downstream sequence
cctcccaaagtgctgattacagatatgaacctccatgcccagcAGttttttcaacacttacagaactagtctcattgcctcttcttcagagataccagca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate